[shrek]

So is this just the OS emulation at the moment? Or could it run software as well?

It'll run programs just fine but only at a snail's pace. For example the general platform demos like the "Ideas in Motion" animation will run but looks very choppy and likes to freeze. I haven't managed to get above 20% performance of a real Indy on any of my machines. This is emulating a very low end Indy too, since it's an R4600 100MHz, 128MB, XL24 graphics. 

Try it out though. Getting files on there is easy enough even without networking. Just put them into an ISO and then mount that in the emulated machine. Check out this link for easily making ISOs on Linux: https://wiki.debian.org/genisoimage

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I had a luck with hp9k370 machine using this script
https://github.com/mamedev/mame/blob/mas...taputil.sh
However it doesn't work for me with indy_4610 machine

I saw that too and didn't have any luck either.