VMD (Visual Molecular Dynamics) up and running in IRIX - Printable Version

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+--- Thread: VMD (Visual Molecular Dynamics) up and running in IRIX (/thread-3041.html)

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VMD (Visual Molecular Dynamics) up and running in IRIX - Irinikus - 08-05-2021

I just got VMD up and running on my Tezro under IRIX 6.5.30:

You can download it from the following site, but you do have to register in order to download it:  
https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - CyberMonkey - 08-06-2021

Download requires registration.

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - Irinikus - 08-06-2021

(08-06-2021, 07:19 AM)CyberMonkey Wrote:  Download requires registration.

Registration for this is free!

Here's a link to another site from which you can download models of other molecules for VMD: https://www.physics.upenn.edu/~robertjo/vmd/

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - Irinikus - 08-06-2021

I just brought the V12 in the Tezro to its knees by loading one of the proteins from an HIV into VMD! (Just note the frame rate!!!)







Here's an image of the virus itself:

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I just ran the same model on the V880Z and it actually beats the Tezro in this field!!!! (I must admit that this result really pleases me, as it shows the XVR-4000 to have had value in this field!!! )

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - Irinikus - 08-06-2021

Here's a comparison of the VMD output quality of the Tezro VS the V880Z!

Tezro:



V880Z:



The V880Z definitely produces a cleaner image!

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Here's the link to the protein part of an HIV's capsid that I used in these tests, so that you can run tests on your machines: http://www.ks.uiuc.edu/~bcgoh/rsv-hex.pdb

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - sgi-enthusiast - 10-17-2021

Hi Irinikus, this looks fantastic.
I am following the link to get a copy of the software as I am keen to see how it performs on my O350 with IR4.

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - vishnu - 10-17-2021

What version are you running there Irinikus? Did you compile it from source or what binary did you DL?

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RE: VMD (Visual Molecular Dynamics) up and running in IRIX - Irinikus - 10-18-2021

I downloaded it from the site which I liked in my first post.

Here’s the link again: https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

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